PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G07290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12763.5 Da    PI: 10.1549
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G07290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-141258249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++ ++ +l+ +
  LPERR04G07290.1 12 RIEDRLRRGICFRKRLAGMEKKAEELAVLCDAHVGFLVI-EDHRLHHF 58
                     8*********************************99987.56666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-11161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.68362IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-10525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16676IPR002100Transcription factor, MADS-box
PfamPF003196.6E-161258IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGRRSGRVVL RRIEDRLRRG ICFRKRLAGM EKKAEELAVL CDAHVGFLVI EDHRLHHFAA  60
PGTIESIVER YKNFLEERKG VHGRHILEKS KSEDFQVPKE TIDLGLNNGG X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117965e-67AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.14e-40PREDICTED: truncated transcription factor CAULIFLOWER D isoform X1
RefseqXP_015637117.14e-40PREDICTED: truncated transcription factor CAULIFLOWER D isoform X2
RefseqXP_015637118.14e-40PREDICTED: truncated transcription factor CAULIFLOWER D isoform X3
TrEMBLA0A0D9W4782e-74A0A0D9W478_9ORYZ; Uncharacterized protein
STRINGLOC_Os04g31804.15e-45(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-17AGAMOUS-like 8